NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211516_10086771

Scaffold Ga0211516_10086771


Overview

Basic Information
Taxon OID3300020413 Open in IMG/M
Scaffold IDGa0211516_10086771 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1513
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_018
CoordinatesLat. (o)35.7593Long. (o)14.3453Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019327Metagenome / Metatranscriptome230Y
F033761Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0211516_100867712F033761GGAGMAQINNHEFYGLDTDYVTKHKELFDFFDSQNLDVEINDDFAELKTILTSKDKDDYAYDFDSAFESYLDNATGFILYLRYNNEIVATYAAKKLGLNTFLESMRLKYPGNYDTIDDFSGQSAYSSCQWVSKEHRGKKWGRVLDHLKKHICFDLMKCDTNYAIHKSDLRDYHVNHLAYSNNKKLAVIPNGDVGGAGEVIDKEYWIAYSSNTEWADKQSEVKTLYT
Ga0211516_100867713F019327N/AVKLKHYTLKPYQLESKHLSQIHNIIEKVVGEKKDEYWDNYTDYSVFDQTMITIGIIDDEVKTFSSIYTREFYGEYVYRLLNRWLMSDDIREEGGSKSYKGEHRFFDMIHQQIEFVKTLKPKFYFMSRQRKNTRWLKWYFNKFNKQYDTNLVVSDEQYRVCNGSNYDCCQTLIYPKEMKIPFEKLL
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