Scaffold Ga0211587_10112967

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211587_10112967

Scaffold Ga0211587_10112967

Overview

Basic Information
Taxon OID	3300020411 Open in IMG/M
Scaffold ID	Ga0211587_10112967 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1171
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_042
Coordinates	Lat. (^o)	5.9997	Long. (^o)	73.914	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057382	Metagenome	136	N
F073646	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211587_101129671	F073646	AGGAG	MLQSEYLELAIELYDIYSDHDIHHKRWLTARELQKLKGGPGFIFKVKKMKGKMSELQPVFNDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQSR
Ga0211587_101129673	F057382	GGAGG	MSKNDLTKAELRQLIDTIVFLQLGARTKELKTIKVKLKNQLKEMESK

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