NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211587_10112967

Scaffold Ga0211587_10112967


Overview

Basic Information
Taxon OID3300020411 Open in IMG/M
Scaffold IDGa0211587_10112967 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1171
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)5.9997Long. (o)73.914Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057382Metagenome136N
F073646Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211587_101129671F073646AGGAGMLQSEYLELAIELYDIYSDHDIHHKRWLTARELQKLKGGPGFIFKVKKMKGKMSELQPVFNDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQSR
Ga0211587_101129673F057382GGAGGMSKNDLTKAELRQLIDTIVFLQLGARTKELKTIKVKLKNQLKEMESK

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