Scaffold Ga0211699_10009542

Overview

Basic Information

• Taxon OID: 3300020410
• Scaffold ID: Ga0211699_10009542
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4000
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F012070	Metagenome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_1000954212	F012070	GGAG	MPIEIKVNENDYILYEILCDYCDEEYVIKYKMREENLKPAIECCPFCSNLIEEPAERIEDDEIGWN
Ga0211699_100095428	F007608	AGGA	MPNPVNKYEKLPQSMYPKVREQVQERIATFEKVIEDHKAAQEEALKMVYEQLEEAKNDLKFLNEHPS
Ga0211699_100095429	F006364	GGAG	MEEKMEVDINLDNDTRKMRIINYLAYMDDKSLREISVALYDLSKRRQELNNRKGIENAQSSE