Scaffold Ga0211699_10009432

Overview

Basic Information

• Taxon OID: 3300020410
• Scaffold ID: Ga0211699_10009432
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4028
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029112	Metagenome	189	Y
F031530	Metagenome	182	Y
F054095	Metagenome	140	N
F079193	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_1000943211	F054095	GGA	MIPQWKMNGKDMRFDGSIEFGVVEVRDLFDDLVVTLWVEQEGNNITVKSLGGIGNGRYDVKVMPIKKPVEEGEEWKS
Ga0211699_100094322	F079193	AGGA	MMKCEAVKTIFKSEDYGLEDHTLTIDKIVELDPQGNVMLTKYVAYVIDPLDNAMVFNYSPYAPLGELLDSAKVWIQCGCPSDCDASGFPRKWDAEALHAWVAG
Ga0211699_100094326	F031530	AGGAGG	MDFVIYKSEADDNGRLVELVRNRHCEVYEVIVDGIPVFNCEDYGQAEHEYNMECV
Ga0211699_100094329	F029112	AGGA	MSKTRNYPTNHVSYENVGDVTNHEEGTCTFELDTIPEKGLRTIDLFQGDERLFSISISDTGVCYQVLSAGEARNCFTLWEDEV