NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211699_10007630

Scaffold Ga0211699_10007630


Overview

Basic Information
Taxon OID3300020410 Open in IMG/M
Scaffold IDGa0211699_10007630 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4546
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-21.0675Long. (o)-35.3923Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F004368Metagenome / Metatranscriptome441Y
F033113Metagenome / Metatranscriptome178Y
F063755Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0211699_1000763013F004368AGGAGMGTRLKDIIFDRHEDHLYEDDRAMRLTPYVMAERCIQVEVASIFQDKEEGDYSTLTYILEGGFKGFHNMEPSDLIREYKGIEELWYELEACDGLYWEPYEEDPIHTLKDEDNTLTKEMKDEIKAKIEDIKENR
Ga0211699_1000763016F063755AGAAGGVVPEALSQRIHGVIGLMIIYGHSGQDIRRAIWRRRYKFLSVFAVMVAVVLLTGCGTVKNKKIELKALDQFWERLATGKNSTGVE
Ga0211699_100076305F000302AGGAGMINTMTQDTKDRIADLERQKIEIENRLEILGYSGNLVRMHELEQEIYEIEDTIRKLLP
Ga0211699_100076306F033113N/AMLKTIEKRLESFVRAELAGVHRIQMTHGTMYLVLDKPGNCDFIHREIRKFYKENINPEGGVNMYAVGDEFAFDFVPADRETPVFADEEEKGVWSEFAEEELENNMPDDVDTLLNLQAESKRGK

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