Scaffold Ga0211699_10007630

Overview

Basic Information

• Taxon OID: 3300020410
• Scaffold ID: Ga0211699_10007630
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4546
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F004368	Metagenome / Metatranscriptome	441	Y
F033113	Metagenome / Metatranscriptome	178	Y
F063755	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_1000763013	F004368	AGGAG	MGTRLKDIIFDRHEDHLYEDDRAMRLTPYVMAERCIQVEVASIFQDKEEGDYSTLTYILEGGFKGFHNMEPSDLIREYKGIEELWYELEACDGLYWEPYEEDPIHTLKDEDNTLTKEMKDEIKAKIEDIKENR
Ga0211699_1000763016	F063755	AGAAGG	VVPEALSQRIHGVIGLMIIYGHSGQDIRRAIWRRRYKFLSVFAVMVAVVLLTGCGTVKNKKIELKALDQFWERLATGKNSTGVE
Ga0211699_100076305	F000302	AGGAG	MINTMTQDTKDRIADLERQKIEIENRLEILGYSGNLVRMHELEQEIYEIEDTIRKLLP
Ga0211699_100076306	F033113	N/A	MLKTIEKRLESFVRAELAGVHRIQMTHGTMYLVLDKPGNCDFIHREIRKFYKENINPEGGVNMYAVGDEFAFDFVPADRETPVFADEEEKGVWSEFAEEELENNMPDDVDTLLNLQAESKRGK