Scaffold Ga0211699_10000280

Overview

Basic Information

• Taxon OID: 3300020410
• Scaffold ID: Ga0211699_10000280
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32754
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (82.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F028314	Metagenome	192	N
F042628	Metagenome	158	Y
F105330	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_1000028014	F105330	N/A	MDRSTWKNWERWWREKLGGDKVNAKRIPVTGRHSGDVPDIETIKFAGEVKAGSVVSSRTLKAVDQARKAANATGKIPIVCQTHKVNKNKAVHLVTMEVDIFLDITKHIRKEEMRIKRSLDSSKDLGI
Ga0211699_1000028035	F028039	AGGAG	MTTTVQLDRWNTIVKEIKFDNKWNETLKNYLKEQKLDELPTPEWTENDPTMAYIYLPTRDLKGNLVRMDKTKVRMFPESIVGYLEKGGLMELPKKVEAPQRSQKKEQLPKMETEKPTLDKKLENKIGDLKDE
Ga0211699_1000028038	F042628	N/A	MGKYTKSNKNNIFRDKPEIAVSEHTVEKDGKKMKMVIPEGKIGYGDVESHAQIAGDLANKHSGDTKAGERVYEEVRKQREEDNGSSVEEHKLKMAVNKMASRMPVMQQFKIVDNTGQHIATDYLFMKTEQSGLTRPLKIRVDRDGRTSEIPV
Ga0211699_100002804	F028314	AGTAGG	MKLFTSLLPLMPQPYKNIVKFFLATLKNVDEKEELVRIGNLFADILEDGKVTPQEWLTLAGKNGLGILKGNGK