Scaffold Ga0211472_10044887

Overview

Basic Information

• Taxon OID: 3300020409
• Scaffold ID: Ga0211472_10044887
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1720
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_031
• Coordinates
  • Lat. (^o): 34.835
  • Long. (^o): 34.8033
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079507	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211472_100448871	F079507	GGAGG	MAIPWMGMAALSGGLGLVGNIFGARSAASAAQAQVDASADQLTKNVMLNREARKGNLAKFIGQNVADYGYGAEEDFRRQKLASIFDSTRKRDLERGANIADFEAMLGMKENPLAREQKQRERKFQLDKITRERQAQMEGMFGPISRTT