Scaffold Ga0211472_10028313

Overview

Basic Information

• Taxon OID: 3300020409
• Scaffold ID: Ga0211472_10028313
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2176
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_031
• Coordinates
  • Lat. (^o): 34.835
  • Long. (^o): 34.8033
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028831	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211472_100283132	F028831	GAGG	MTYTKAQIEAGVKFIQNANVNFDYDKDDMRIHFCIDANNNRIWTDGTSIWNKNVVKGVKVDTISLIATHSKEMYAEEDWDSLKEEDLYWSGGLAGTISYDGSGKDGTWYDGADDENNVLINKIKAQDSDGMIYTDDGFIANTKKYMEEHCDFDSKLLGEFLDFDYSEQGMQDDGAVNLDVDMDGDFWIKCNDELVKFAHGIEKVA