Scaffold Ga0211651_10134850

Overview

Basic Information

• Taxon OID: 3300020408
• Scaffold ID: Ga0211651_10134850
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 995
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0596
  • Long. (^o): -84.553
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099443	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211651_101348502	F099443	GAG	MHCGMLTWFPLGRCQLMVHEYKLIEVEEAYSLRDRLDSLEDAYYLDRSKFRPIRGIENHEIGSYHCIGDKSLPKDLLEYLCNIAPKKELPLSKIVINKYIAGDWIPKHCDDHGPAYFTTLHLEDSEEGLSYEGGFSKNKAGWTKEYPTDLIHWVEPVVKPRYTIIFLYDRGIGTFGGIKI