Scaffold Ga0211651_10006475

Overview

Basic Information

• Taxon OID: 3300020408
• Scaffold ID: Ga0211651_10006475
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6538
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0596
  • Long. (^o): -84.553
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070206	Metagenome	123	N
F074982	Metagenome	119	N
F099443	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211651_100064754	F099443	GGA	MVHEYKLIEVEEAHSFRDRLNLLDSAYYLDRSKFRPIRGVENHEIGSYNCIGDLSLPKDILVDLIKISPKKPLPLTKIVINKYDVGDWIPKHCDDHGPAYFTTLHLEDSEEGLSYEGGFSKNKAGWVKEYPIDLIHWVEPVIKPRYTIIYLYDRGIGNFGRIKI
Ga0211651_100064755	F074982	GGAG	MAVIKRTGYVSRDNCDALVAALPTLPNAHGREYRNSDAGGDKVSVYQTLRYYSYPESLKTAWKTYMPSEVVSSYLVSTFMKLPANQGILFPTTLSNPARLNMREPVRAIGCFLSVALLDGQHLTLDGTKYNANKGDALLFEGTYTYETEIVNSDAIWSVNLVPTWKKETYGA
Ga0211651_100064756	F070206	AGGAG	MISDQIDQLFSQETVEQPQTLIFNKLTGVLVAKMMGDNLSLVNTKYCKGKVISYNPDTHEYIGNYDSGSVQSKATRPRVASEMSLDDTAGLHIRKKYNYHHQLNHIIDMMKLLLDASSLTDEQKANFNAMKEYIDEIRDLNNKYKDSYANDPNWDYKTREDVLDEIDDKLAGGMAEEVHSEADVTGLQKLGGRLGA