Scaffold Ga0211575_10039491

Overview

Basic Information

• Taxon OID: 3300020407
• Scaffold ID: Ga0211575_10039491
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2011
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.3379
  • Long. (^o): -127.7376
  • Depth (m): 650

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027653	Metagenome	194	Y
F043978	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211575_100394911	F043978	GGAG	MISFIIPFSTIEKDKFLNLNEKEDLWEENNSANIVYSTIKTIKNINSLKCEKEILLMDNSHTWPEVDLPNVRVIKGWQALPLEELEKIPEYMNHRDIQNSLDNLGCLTMWVSMAFHLGTIEAKGDYIVLQHNDTFYH
Ga0211575_100394914	F027653	N/A	KFNVYLWGGFISRPDETKDIDVLITKRNGQYATLKELEELMVDMFNLAYDTHGFFLDTCYMRKPQWIGNYPRNKEFLKSVEMKQLFITITKHEDKEMVCKYRRYGLLNCSYTGSFTIRGVEPSSLVERWVDLDANYARMVDLRRIIKYYDNDKERNIEDFLNKFQEYSGY