Scaffold Ga0211496_10343822

Overview

Basic Information

• Taxon OID: 3300020405
• Scaffold ID: Ga0211496_10343822
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 557
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_062
• Coordinates
  • Lat. (^o): -22.3407
  • Long. (^o): 40.3444
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023620	Metagenome / Metatranscriptome	209	Y
F049045	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211496_103438221	F023620	GGAGG	MKTALFLSDYDLSTVHYLCSYYMDNANLDRQDVDYITELQNRVENLMEVK
Ga0211496_103438223	F049045	N/A	VEKLLDFDGDEEISFYYLKDNILTNSRLEDINSYGMGIEFTVQDTHEFLEEN