Scaffold Ga0211659_10344503

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10344503
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 651
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000896	Metagenome / Metatranscriptome	845	Y
F037233	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_103445031	F037233	GGAG	MDELDNILSNIDLEEEKNEVKEDYADEWWCMDCEHGPMDEKDDKCTRC
Ga0211659_103445032	F000896	GGAGG	MTNKINMVINLSILALLIYLSVAVKQIQDKVFPDPNVMIPLAGMQMDSKSELEYNIREFLNTALIQAINDMEN