Scaffold Ga0211659_10048783

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10048783
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2010
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005130	Metagenome / Metatranscriptome	411	Y
F007086	Metagenome / Metatranscriptome	358	Y
F042973	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100487832	F005130	N/A	MAFNVQDYMSKNKIKLGKVTREVGDTPFKGGHNDIRKTNYEVKLTEDGKLDLYTHKRETK
Ga0211659_100487834	F007086	GAGG	MTKKELVDIINEEISDAKFGVNHFLVTEELKESDKDIIRKIIRQEVSAIFFDLFKKRKTWGA
Ga0211659_100487836	F042973	N/A	VNRWLELKNDETMHPHKKMAMGLKELKYQLRETEKFFNWYNKIKTMNELDSNQYWKRTNTHIYKIKERLINIAKTIQEIEK