Scaffold Ga0211659_10002124

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10002124
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10673
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007723	Metagenome / Metatranscriptome	346	Y
F023218	Metagenome / Metatranscriptome	211	Y
F057374	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_1000212419	F007723	N/A	MIKKIKSKLLTYLFKDWVMNETDLETLQVSKQFIRKREIEITGHVPVMGFRSHTNK
Ga0211659_100021242	F057374	N/A	MNKIFLFIILLTSSLLSSQNFVGEKFRLSADSDNIVITFEDLNSDGVYIDGVLTKSFGRLTITKKQFKSTFLSNLKKISSKTDYDIVEDVYRLDKYSFDDNVVFITVNGKIGSITTKEIKELRKL
Ga0211659_100021244	F023218	AGG	MIFPSYKRPIEYINRIPYVVHAMIPIDRCKNVPAIKEWLGVDTAFKVHSKGTYWFCEEIKEADWEDV