Scaffold Ga0211532_10030822

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10030822
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2755
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y
F077194	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_100308223	F050305	N/A	MNNLNTTIDKIAMSEFDMHYYQLGDNEKQWCHDEMVNNPKWLKKDWEDPLWSVADKWKAGLPIYKTYN
Ga0211532_100308224	F001740	N/A	MYNPNNPSNWSWSKAFAEMDKTVHQAEMTQQCINHVLNYPGEANGVFMTLSKSQQDDVYELLNEIL
Ga0211532_100308225	F077194	N/A	MQTLTILDFGSGEVHQYHNINYEKYEMELDEFVGVQLGYNLNEVEYMFHTDKTIYNLTNK
Ga0211532_100308228	F009959	N/A	MKMTEQEVIDKVCDRVVNTIYNELDYYMFEFLGYTETNEQYVKDADKLINKIINNLIK