NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10111435

Scaffold Ga0211617_10111435


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10111435 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1142
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080023Metagenome / Metatranscriptome115Y
F082546Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211617_101114352F080023GAGGMKKFTIQIAPIRAPYMRCKQDAVPTVCKKYVGGKVEYHEFRWNNPKAGRNIMWKDNTDSEVEREQYKQQFADRVQRAFDKANIRFYKHYNGIKFEDEIVRVYAPYPTLLPDTTITVYSQRVHEYNAHRDFLRDIVSKMNIQFNTLMCVLQQGKYDLAKDSLYKLNKYMFDLQSMCRPEHHEVVFKGKVNPLTANLR
Ga0211617_101114353F082546N/AIESKAILRRRIRNIEQDIKACRNSGNTLRMRLLYAQLSATTIKLASS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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