Scaffold Ga0211617_10093128

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211617_10093128

Scaffold Ga0211617_10093128

Overview

Basic Information
Taxon OID	3300020401 Open in IMG/M
Scaffold ID	Ga0211617_10093128 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1258
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_052
Coordinates	Lat. (^o)	-17.2387	Long. (^o)	53.9775	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040144	Metagenome	162	Y
F042934	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_100931283	F040144	N/A	MTPTTTKPYLHEFYVTRKCTKMEYFTVKAESMEDAIWEAENGNEYFDFDWEEFDFETVEIKEQEIPVQQLALPL
Ga0211617_100931285	F042934	GGAG	MKSTLNSKDYVAFARKFVKETVDRMGVEELKGFAINAIHEDLQDVYDDLGQRGVFEDMQSWDEDVFFEVAEDF

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