Scaffold Ga0211617_10020488

Overview

Basic Information

• Taxon OID: 3300020401
• Scaffold ID: Ga0211617_10020488
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2837
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038639	Metagenome	165	Y
F080023	Metagenome / Metatranscriptome	115	Y
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_100204883	F080023	GGAGG	MSKKFTIQIAPIKAPYMRCKQDAVPTVCKKYVGGKAEYHEFRWNNPKAGRNIMWKDNADSEQEREQYKEQFAQRVQRAYDKAVARFSTHYNGIKFEDEIVRVYAPYPTLAPNALKTVYSQRVHEYNAHRDFLRDIVSKMNIQFNTLMCVLQQGQYDLAKGSLYKLNKYMFDLQSMCRPQHHEVVFKGKNNPLTANLR
Ga0211617_100204884	F082546	GAG	MKIEKKAIIRRRIRNIEQDIKSVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0211617_100204886	F038639	GAGG	MKYSKKQKSLSQPVIDLLSHMSKLVDKGLTPVEAVEWMIECEPQWRCSQGYQATKGGLRQARQRLERRVEMMRQANNGVTTFINNQPKK