NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211623_10157367

Scaffold Ga0211623_10157367


Overview

Basic Information
Taxon OID3300020399 Open in IMG/M
Scaffold IDGa0211623_10157367 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.056Long. (o)4.6606Alt. (m)Depth (m)700
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021121Metagenome220Y
F078823Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211623_101573672F078823AGGAMNNRPDGPELEELHDAVMEVIDDYIDFEYSFTKDGTDFSCCEMDGNADEGDDLETLTMWEGKGLFEVTIERGYKQRGMEGEEYIYDMNYQGTSIEGDYDAYVTWLKKKWPGVYEEALETLKNE
Ga0211623_101573673F021121GAGMNEDHAIEVIKSFQERLMEADNLKKDANGMMNYETCWKAMRQEGPAILNVAKHLFAEHLRNKENG

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