Scaffold Ga0211623_10003338

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211623_10003338

Scaffold Ga0211623_10003338

Overview

Basic Information
Taxon OID	3300020399 Open in IMG/M
Scaffold ID	Ga0211623_10003338 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6294
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_068
Coordinates	Lat. (^o)	-31.056	Long. (^o)	4.6606	Alt. (m)		Depth (m)	700
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035723	Metagenome	171	Y
F040871	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211623_100033382	F035723	AGGAG	MALVTNKTEETNHLRGKSRFYVAGWVANRECENPQALPESCKGDIVVEKWHEEYLSGYGDSFANGECLSPPVED
Ga0211623_100033383	F040871	AGG	MSTNDRLEVLETKLKHIGMMGQWYQRYDISKSAEECKEIIKEVKEELNEPCGMSRK

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