Scaffold Ga0211623_10003000

Overview

Basic Information

• Taxon OID: 3300020399
• Scaffold ID: Ga0211623_10003000
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6684
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.056
  • Long. (^o): 4.6606
  • Depth (m): 700

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042932	Metagenome / Metatranscriptome	157	N
F051977	Metagenome / Metatranscriptome	143	Y
F105353	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211623_100030002	F042932	N/A	MADEEQVDQVEITKSDEEQDSYENTVAKSIDTLADVVQSIAQSQQGVEKAVSEISERVKALETPSDLPLSPKGTQGGDDVGAKVTVPNDPYPVGDQVGLDSDRRNSNPPKKDPSGLRMQEKPVNKAEEDYEPEMIQKSEHEFSTETPRPGSAIETVDKSFTKDFSPILKDARAEGFEGLSKVAQNILSGKYYKPTPEEIGGF
Ga0211623_100030007	F105353	GGAG	MHEIWLCYKCGKFVGMAGGDVFFSMMAKEHPEYILAMVQEKILTPITTNKNGINRRNKTFGR
Ga0211623_100030008	F051977	N/A	MGTAIYVYETEKEYLKIYHRIDKEVMHSAPILDIFMKPDKKLWVVSKVTKNKERPQLGRSIVNFVNGTVFEYSNGDERPILHNSVVFNPKKGRVEFFPKKLRAAELWIRVDRFYGMPPKGNVYLDQSKRFYDVSRDRINFILKNKDGLQG