Scaffold Ga0211637_10019449

Overview

Basic Information

• Taxon OID: 3300020398
• Scaffold ID: Ga0211637_10019449
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000949 (ERX555993-ERR599072)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2818
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.1719
  • Long. (^o): -129.6713
  • Depth (m): 696

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013596	Metagenome / Metatranscriptome	270	Y
F094574	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211637_100194492	F094574	N/A	MSIMDTKLRSFNITDTKMYERFKQIQLERGKNATKRLNELIEKEVKEADPKFVELTAIRSNDAPDIIVPNPFLMDQSHSLPQWEKYLKTLTIAEGNKVLTHIIALKELTKYFEGYSLDSK
Ga0211637_100194493	F013596	N/A	MESFAPFLTVLSIVVSLSVCAVLIARIYRKNSALDPKITNKLRKQQEEYITEVERKNRSLQNKLNSMQKGPELSEMGDLDGVLPELLGQVEGILPKWATKFLKSNPDIVNSVVSYAKSNPDKAKELIGKFVKIKPKAQGADNATLQGL