NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211583_10048732

Scaffold Ga0211583_10048732


Overview

Basic Information
Taxon OID3300020397 Open in IMG/M
Scaffold IDGa0211583_10048732 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1663
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)6.0124Long. (o)73.8985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080023Metagenome / Metatranscriptome115Y
F082546Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211583_100487322F082546GAGGMKIEKKAIIRRRIRNIKADIQAVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0211583_100487323F080023AGGAGGMTKKFTIQIAPIRAPYMRCRQDAVPTVCKKYVSGKVVYQEFRWDNPKAGRNIMWKDNDATIEEREQYKEAFARRVQRAFEKANIRFSKHYHGIKFEDEIVRVYAPYPDLAPNATVTVYSQRVHEYNAHRDFLRDIVSKMNIQFNTLMCVLQQGQYDLAKGSLYKLNKYMFDLQSMCRPEHHEVVFKGKVNPLTANLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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