Scaffold Ga0211583_10000785

Overview

Basic Information

• Taxon OID: 3300020397
• Scaffold ID: Ga0211583_10000785
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17908
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044531	Metagenome / Metatranscriptome	154	Y
F045110	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211583_1000078529	F044531	AGGAG	MQHYLEDIRVSDEDTYITDEHNNVITTADVDSGFWLCGFDRDGTCFEMTKISRRMAKDIMFDYGSYRLKDLTITDFGDARYYYNEETCDGGVLLVH
Ga0211583_1000078530	F045110	GGAG	MQKTLNKKTVNAIAHNIIVGDAIASAWDFVTSMQVHNEFDYAFCNSATGDYCDTLWHTTQNVKLGQSLDLIDQNDMAQTALSNFLNAFEDVNIQEITVEDVYTALDSIAGDTAMRENYYMQLQQHFKNFVDQNTNFAFKREGEYEAYKLVSKHTAKQKEKLVRDYLNKYDAWEYVQLNNDLVWQ