NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211687_10029933

Scaffold Ga0211687_10029933


Overview

Basic Information
Taxon OID3300020396 Open in IMG/M
Scaffold IDGa0211687_10029933 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2616
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005012Metagenome / Metatranscriptome415Y
F007392Metagenome / Metatranscriptome352Y

Sequences

Protein IDFamilyRBSSequence
Ga0211687_100299333F005012AGGMSSVDMKQVLISLLLFPSLSFADDFELLCKGEETKYLDGEPSSKEVTTKVIGIQLYEESMRLDGEWFDNKSDLTEDYLLERSYVKSKDNIIGVRNFSTNAFIEGREIQTIKIDKVEINILANDIFWTHEFNRVDKTNTEAKTIYAFRKSFKGACK
Ga0211687_100299334F007392N/AMFFCSLAFSEDFNLICEGERKVRNLSGKKFNVTNFESVLLKINSNTMEYIGVNSGRSYFFSNREYTAPKKPPHEDIKITEQYLYTPKTIKASQIIADTGDTKESSINLFSLDVNLLTGELSESEIIRNKKTNVKSMSNNFQALCKREDRSY
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