NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211497_10009544

Scaffold Ga0211497_10009544


Overview

Basic Information
Taxon OID3300020394 Open in IMG/M
Scaffold IDGa0211497_10009544 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5523
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_058
CoordinatesLat. (o)-17.5656Long. (o)42.1988Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029556Metagenome / Metatranscriptome188Y
F061282Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0211497_100095441F029556GGAGMSGMMNFDTSKIEEMKRKREEGLPYISEDVVEASKNAKGGSELIYGRVKDRVSEDLWNYFQVILSRVRELEDKPRILWFQDTSRDPEVQFLKNKESRDKFERFVFPSDWSLEKYHLDLGIEYEKSVVLK
Ga0211497_1000954410F061282N/AALNEEMPGTNVSNVAMRGMPLGKPPKGLVMKKFGGVDVFAVDPNIYMKSRFGKKKFERYKKYVGEDEVGEYIRMFARKNPKKPIILMDTSTGCMQFLRHGFKSGF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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