Scaffold Ga0211618_10061461

Overview

Basic Information

• Taxon OID: 3300020393
• Scaffold ID: Ga0211618_10061461
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1411
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_045
• Coordinates
  • Lat. (^o): 0.0033
  • Long. (^o): 71.6428
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F010572	Metagenome	302	N
F074026	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211618_100614611	F010572	GGAG	MSGYAGSPSGYLNPVAVDKIQHPDYDAKAAENTTMRMVQYLYPVIKNSVEMLEALCKETDVQVPTDLHDNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWATD
Ga0211618_100614612	F006818	AGGTGG	MAGPPQMTTLVRKNPQHTLTEEPAREVAPAPNVLTRQPVQQQMMPTAEAMSDEELDLYVKRLSMRHKRLSRKWWGLRRKHGKDECPYCGMATGGGFCKLHQRDYDEYLSALSTRQNRRFG
Ga0211618_100614613	F004336	GAG	MRFIRNMLFSTGRYPSTMGAGGQQDVEFCRYIEWVWFKRCVWLMGIGFALGGIGLYIGYYYDSVVTEYGMAIWGVAWLYNGFLMFVMAVSILLSMIKALVVKAFVSPEVQVGQAATRTAQMMRKGGL
Ga0211618_100614614	F074026	N/A	EGFAQKAYIEFHDDKLDFKPNFRRISIYTYHPKWIPMPDGAEPIGYEVAYQLSREFKRDMYEKMDSQKNAYVDVVRP