Scaffold Ga0211618_10015946

Overview

Basic Information

• Taxon OID: 3300020393
• Scaffold ID: Ga0211618_10015946
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3396
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_045
• Coordinates
  • Lat. (^o): 0.0033
  • Long. (^o): 71.6428
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031151	Metagenome	183	Y
F066846	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211618_100159461	F031151	N/A	AVRGQAVESGINMVLNGLSLEEATEKMICEFDVNCSRINDPKTEDERNNLVPLLNLGTKEFQRYAFTWDLLTYQKKIELEIDNIPFVGYTDFHFEDKKTKEDFYIDLKTSKSLPQRISISHAMQQSIYQQATNSRQILWYLKNPTKTKDAEFISLSLDDYSEPMRICQHILKVMGNYLKTVNNKDDVRNSLVPNPDNWIWKEQTVLSARKEVWGY
Ga0211618_100159463	F066846	GAGG	VLEFITYTMYLITITDIETANVEVHRLVFDNKAECVSLAKAINQERDPIANKKNCRRVINYFTELP