Scaffold Ga0211666_10122541

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211666_10122541

Scaffold Ga0211666_10122541

Overview

Basic Information
Taxon OID	3300020392 Open in IMG/M
Scaffold ID	Ga0211666_10122541 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1033
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9488	Long. (^o)	-96.0293	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F011578	Metagenome	289	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211666_101225413	F011578	GGA	MITAFITGVVVAIPTSLITMKLLNSSLFISNTELKEANARISLIINNLDDFREERMKEKMERLGITDKLDPRLSTHIK
Ga0211666_101225415	F001479	AGGAG	MSKEMLFLCDTYTEFLQKNNLPHRCASELLYSSDTMNKLTVSQTYWLENFISTWDIIALH

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