NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211666_10046023

Scaffold Ga0211666_10046023


Overview

Basic Information
Taxon OID3300020392 Open in IMG/M
Scaffold IDGa0211666_10046023 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1887
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC100P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002146Metagenome590Y
F057389Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211666_100460233F057389GGAMTTYKSAYKTTTFVEDKKINVVHHATKIIEHDVENNTIKLNNGGWYSKTTKDRMHSYLIENASYRLYQKKGNWFLDQVDKLNDYKTIKTIPYENNMILRVSXLKIYLTF
Ga0211666_100460234F002146GAGGMIKNILNFLDYVLFLGMFYLIYLGLKHADQINQLIIELKGGVIX

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