Scaffold Ga0211675_10005899

Overview

Basic Information

• Taxon OID: 3300020391
• Scaffold ID: Ga0211675_10005899
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7088
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_096
• Coordinates
  • Lat. (^o): -29.6749
  • Long. (^o): -101.2137
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F039679	Metagenome	163	Y
F059455	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211675_1000589910	F059455	GGA	MNNFIEKEIVWSKGKTKKEMSNQTFWSSSKDCSGLSGLEVRASDFNTHVVCTAITSQGRSHNKYFQIPVDKIEEFCDALMEAKQLMDSKKNETI
Ga0211675_1000589920	F039679	N/A	MSAKNSHLTIREDLLEEDPDIAVPIRFLDYQEDAWIGDSDTLNIDEEYSPENGEQLDNMSGYNMIIKITDPNQLDKYGNPWKERLAFAISADFDWN
Ga0211675_1000589922	F007770	N/A	VGLTSLFFSFKVLYIMSGEGLSVSFRRTQKTSKSNQQLLREFQKIIYASRVTTHMKWYGEAHSVDILEHGDDNRPKFQQEYVAIKDTFQFEISVYDSWYQDADLYESHEREDSFVSFARKFAEDNNLMYFPDGFPAEWIEQEIIDGKKNWNHYNVKPDDKNIDKICEVWHDYSMARLKKDRDELWHQARDLIKQLMEKKEYAY