NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211680_10199488

Scaffold Ga0211680_10199488


Overview

Basic Information
Taxon OID3300020389 Open in IMG/M
Scaffold IDGa0211680_10199488 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)771
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-61.9898Long. (o)-49.3613Alt. (m)Depth (m)790
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005524Metagenome398Y
F024648Metagenome205Y
F062171Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211680_101994881F062171N/AMRRGDLISYGTMPHWKLRGCLGILLRKLQYDSDDDLGASNWDGEPAWWIQYMDDEGPTWTYEEELTLVTKGN
Ga0211680_101994882F024648N/AMFRTKAGLGLIVKKSGGYFTYSTVAADQRKACQTIEIKRFYGYCDDMSHGQVLEVILLPNRKYRRKRK
Ga0211680_101994883F005524GAGMDIGDKVQHFSTGSIGIVIDSSYEVDSAFQQMCVVWDDDLAPHKDSWERSEALSIIPHEPYVYSFPD

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