NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211678_10326187

Scaffold Ga0211678_10326187


Overview

Basic Information
Taxon OID3300020388 Open in IMG/M
Scaffold IDGa0211678_10326187 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.8785Long. (o)-73.0369Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036782Metagenome / Metatranscriptome169Y
F096031Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211678_103261871F096031AGGMTQGVLLFCFDTEHIRYHKILEKCVALIKKNLKLEITVVTNFETFKEIS
Ga0211678_103261872F036782N/AMDIRSLKQQSELSYDIAVAKRNALEKANSRQVLAYNGNLFRADPQTICLVRTLKETHSTFFVLDTNNNPVEIKDADDFLNQLIARNQEALNAYHQLYETFTRKGD

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