Scaffold Ga0211590_10107584

Overview

Basic Information

• Taxon OID: 3300020387
• Scaffold ID: Ga0211590_10107584
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX556119-ERR599023)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 844
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_064
• Coordinates
  • Lat. (^o): -29.5123
  • Long. (^o): 37.8586
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031530	Metagenome	182	Y
F079193	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211590_101075841	F079193	N/A	YGLEDHTLTIDKISELDPNGNVMLVKYIAYVIDPLDNAMVFNYSPYAKLGELLDSAKMWIECGCPSDCDASGFPRKWDTESLHAWVAG
Ga0211590_101075842	F031530	GGAG	MDFVVYKSEADNTGRLVELVHNNHCEVYEVIVDGIPVFNCTDYSIAEHEFNMECV