Scaffold Ga0211677_10125745

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10125745
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1103
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F087886	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_101257452	F087886	GGAGG	MSNFRKIWKLDLMDWDNSENKFVDRYSTYHTSKKKAVERAKSYIELIKVDKLTSVNERTKNSVSVHSASGDTLGYICSERLL
Ga0211677_101257454	F021206	GGAG	MTVTLNQILAMENVLATRKIPSDIEAMAKAKRYSNSKQKEITLGEQPLHYVLRILAKEGI
Ga0211677_101257455	F013377	GAGG	MTRKILKHWALFYKHGERQFISAPSRQELDRAIFGGAYAPSSDSVTYYVEYESDIKDTPYNQVHEV