NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10005158

Scaffold Ga0211677_10005158


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10005158 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8086
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004688Metagenome / Metatranscriptome428Y
F016342Metagenome / Metatranscriptome248Y
F049999Metagenome146N
F062173Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211677_1000515816F062173N/AMEIYTYDSKIIGPNGYKELMVAVLNDKGNPIDSCCHKLDSPDIHDLTTAETGAHEFGVKGWILDPADQYQGYAVKK
Ga0211677_100051582F016342AGGMRSKDYHALKDEFLRKSVENKEIIKQSSQGNFGMYDVLPANCARTVSEACDEFFKSRNIRYGSAWFHDRNDRKKKIQQAKDERNTNS
Ga0211677_100051584F004688N/AMIEKYTMPCIHMNGSDENSLRRQYNDLFEAVSEAQVKLLYDTDFHERDYYPLGGEAWDKAFKEREEVKEAINTVYQYAKQHMHYLDYGKEPLPDED
Ga0211677_100051585F049999N/AMERSHCQMKIKNYLVIIEEVNLLQFKVEAPSEAEAIDLVEAGEAGDPIDQKAIEFNCLSVKEHVK

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