Scaffold Ga0211677_10002151

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10002151
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14446
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011797	Metagenome / Metatranscriptome	287	Y
F051268	Metagenome	144	N
F055859	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1000215111	F051268	N/A	MKMEEKKELLKIVLKRLKLARLHIGESIINAFPKINLKSRIKEEKETVELILEEANQYGLRYEVDEFAKKFLKEDPTLSDLEAYVMAYNEWIK
Ga0211677_1000215115	F011797	N/A	MVDVLNTFVAIILSVVALTPIFLLVTLLNRSKIPQGTDPAVIKKLEDMDQTIASDTNNALDQVSAKLEDFEARIADLEDQRTTVSGFKSKK
Ga0211677_100021519	F055859	N/A	MENLILQLQTLLDEIEHEELGFPDVKEKLQEIVEDANNAFDVDGYIEDEINY