Scaffold Ga0211646_10009644

Overview

Basic Information

• Taxon OID: 3300020383
• Scaffold ID: Ga0211646_10009644
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4188
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.1008
  • Long. (^o): -84.5107
  • Depth (m): 380

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022559	Metagenome / Metatranscriptome	214	Y
F046089	Metagenome	152	Y
F060453	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211646_1000964410	F022559	N/A	RLKSSINRIKEGPAVTDSDMKNSGLGEVIMQLVPRKYRKAASFLIPQVEEAVKKDPALIEKVYEKIKSANSTNSKASEPGTETQTAQTL
Ga0211646_100096445	F046089	N/A	MPSVIQGFVVTTKPKDPTLESFPTVDTVAAGATGTVVYPNSYKGVAISAAIINQDTVNATTISLNGSTTFQLSAGGQFNVNDQNIVSIRITAGAAGTTQIVAQVAPTLLTTERARWDVLR
Ga0211646_100096447	F060453	N/A	VAFKLKTSKTINKVLAGAGIVALGSLVLNSVSPGLMQGTMGKIILPAVSFGVGGVESLAGAVVTEFAGHASGARALDNTLTETL