Scaffold Ga0211686_10009704

Overview

Basic Information

• Taxon OID: 3300020382
• Scaffold ID: Ga0211686_10009704
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4291
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_084
• Coordinates
  • Lat. (^o): -60.3606
  • Long. (^o): -60.5096
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211686_100097043	F006666	N/A	VNPKKHKDFTNGIAEEVGVHQQVVDDFISFYYSKLRKKLSKLAYPRINVEGLGTFEIRKGKLETAIKKKKSMLGNIAKRTYNGYAKSENIIKDIKEMSDVLNKLEEAKLRKVDFKSKKNG
Ga0211686_100097046	F005243	N/A	MQQSNLEDKEPNLSKEELNARRDEITSFYKDNIQHLKIQAEYETLLADIEKARAERMQAQMFMSQQYADQKEGGVASDSEEAKAFKEAMENAAKNID