Scaffold Ga0211498_10101288

Overview

Basic Information

• Taxon OID: 3300020380
• Scaffold ID: Ga0211498_10101288
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1083
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_057
• Coordinates
  • Lat. (^o): -17.0283
  • Long. (^o): 42.7449
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039872	Metagenome	163	Y
F082541	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211498_101012881	F082541	N/A	IQFPAAMTGSNISFDFALDNSTWVDVKETDGTDVTYTVSAGDILRVDPSGWAFASNGYIRITSDGNEAADRKLILHFRHS
Ga0211498_101012882	F039872	AGGAGG	MSTDIGGLVDRVYREYLEPMDDLVSYTTLSTGINDSVTSVVFEGDMLSIEEEDALDKGTVIEINQELMICTDLNSVTNTITVKRGARGTTASAHTAGDIIKIAPPFPRKNVFDAVKDQINNLFPTLFAVETQSVTTGDGYTLLGAYNDVGTHNYIVSIIGAISQYTDFSSNSDTTGVKFSNVACSLVELPNPFTYNDSDGVSRTFTYSSGPSVVHAVQFSGINTGHTAFVTFKKKFIEPTAETDTLTSIGLEQEYEPIIMAGVAAQMLAGRDIPAAT