Scaffold Ga0211498_10082838

Overview

Basic Information

• Taxon OID: 3300020380
• Scaffold ID: Ga0211498_10082838
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1202
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_057
• Coordinates
  • Lat. (^o): -17.0283
  • Long. (^o): 42.7449
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211498_100828382	F033590	N/A	MGKFENKFLSLLKEDEVPAIDANPGDDQAALANTLDDPNTAGDLEDVQDNQPNTARELELLQDWVSNIDEIIEYMNGGTDSVLGILRTDNKIGTIFDGISDATKSEILDVCERLASLNQIFKNLYLEKHK
Ga0211498_100828383	F033600	N/A	MMKGILFEDLYMYTNKYWKDVKSRHVRPTTKTLADIANASPETYNKVKADLVPFPGDHAVEQLGSAFKNISDAQYLLNQLFENPTVNSKPETQKSVNLKLQKIQDLIKSVTDDLDHDSSDNS