NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211498_10000150

Scaffold Ga0211498_10000150


Overview

Basic Information
Taxon OID3300020380 Open in IMG/M
Scaffold IDGa0211498_10000150 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22297
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (84.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_057
CoordinatesLat. (o)-17.0283Long. (o)42.7449Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048328Metagenome / Metatranscriptome148N
F067759Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0211498_1000015015F048328N/AMSGNAHTIYILGNQSVDLVLSSDGINVDNRPMNQTKLVVHKGLTNQLNFYVRNRDRVLQNLSTKTLYASIINPNTSRRVVFKPLSLVNSGTSGEARLDLTVGDLTDLNPGFYHISITESSDSGVSQNPLYANQNDRIITDLEVRSSLEYEPIASQSATTFTQTGNTELGDAANTFVSSSLYGNQDKNFRHSRHTVAFYMTDFVGNITMQGSALESAPTQESDWYDINVQGDAGTAAVPYSTAYNGIDPFNFVINTNWLRVKFDKTSGSVDKVLLRN
Ga0211498_100001503F067759AGGAMKNKQPETKPVEQQVYANKDNLEAHIIADMLRIESITTELREFKEDTKHRLNKMENWLVAIVGTSFTTLVALVIGLLVNFLG
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