Scaffold Ga0211527_10039285

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211527_10039285

Scaffold Ga0211527_10039285

Overview

Basic Information
Taxon OID	3300020378 Open in IMG/M
Scaffold ID	Ga0211527_10039285 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1523
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_038
Coordinates	Lat. (^o)	19.0342	Long. (^o)	64.5162	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062259	Metagenome	131	N
F090997	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_100392853	F062259	GGAGG	MNDKDLEREAREAFDGAKRALVYDYMYMGIEVGRDNLEYMGFKHIETREYIKIPKCGIAFRKDK
Ga0211527_100392855	F090997	AGGAG	MKIRVKAEETIYLEYFVDVPEEILEESKDRLSKTYLKGAIHNWIDENESEFNFQDYDSFRGWVAWEEVQDND

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