Scaffold Ga0211527_10012059

Overview

Basic Information

• Taxon OID: 3300020378
• Scaffold ID: Ga0211527_10012059
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3202
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_100120595	F030928	GGAG	MKEWLKKLEAYTSFSILGFTIFICLIVIVVNCKYIIKLENTIDTMWHEIEQVKETNISLYQFIEEHKNDFD
Ga0211527_100120596	F083388	AGGA	MVGMLMQKRISNIEWVITRCNPEFKKVWERKLEQLINRRVEMAYERMVEKARSVH
Ga0211527_100120597	F004988	N/A	MVKLVETICPRCNGNGYIVVLDKDAFSKEIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRRNVEGGRESIIKWSGETLPEKGQ