NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211647_10028019

Scaffold Ga0211647_10028019


Overview

Basic Information
Taxon OID3300020377 Open in IMG/M
Scaffold IDGa0211647_10028019 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2195
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0663Long. (o)-84.5304Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019327Metagenome / Metatranscriptome230Y
F032309Metagenome / Metatranscriptome180N
F033761Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0211647_100280192F019327N/AVKLKHYTLKPYQLESKHISQIHNIIENVVSKKKDEYWKNYTDYSIYDQNIITIGVINDEVKTFSSIYTREYYGDNVYRLLNRWLISDDIREKGGSKSYKGEHRFFDMIHQQIEFVKTLEPKFYFMSRQRKNTRWLKWYFDKFNKQYDANLVVSDEQYRVCNGSNYDCCQTLIYPKEMKIPFEKLL
Ga0211647_100280193F033761GGAGMAQINNHEFYGLDTAYVEKHKELFDFFESQNLDVEINDDFIELKNILTSKDKDDYAYKFDPAFETYLDKATGFVLYLRYNNDIVATYAAKKLSLQTFIKEMKLVYPGNYETINDFEGKQAYSSCQWVSKEHRGKKWGRVLDHLKKNICFDLMKCDTNFAIHKSDLRDYHVNHLAYSNSKKLAVIPNGDVGGAGEVIDKEYWIAYSSNTEWADKQSEVKTLYT
Ga0211647_100280194F032309N/AMRTETKEFFDYTKSLPFKDITHFWDIPYKEMLDEVKSVDEKYWRRPFDADNDQIDRMKLDDSESVNHYPGLKGDLVEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVAEFSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLNGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRKPQYQIIWQGIYKKQFRQLVMENK
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Institute for Fundamental Biomedical Research
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