Scaffold Ga0211682_10048266

Overview

Basic Information

• Taxon OID: 3300020376
• Scaffold ID: Ga0211682_10048266
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1729
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.2658
  • Long. (^o): -49.1658
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040871	Metagenome / Metatranscriptome	161	Y
F065937	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211682_100482663	F040871	AGGA	MSTMERLDLLNEKMKQMGMMGQWYQRYDISTSAQECKQIIKELKEELDPPCGMSHK
Ga0211682_100482665	F065937	N/A	MFKKLLVTTVAMAVSATTFAGISLSGLYEGTLDSHGAYTQDITTTMKGTQGNSTVTVVLDKAFDIDDMYVETSTGPLTFKIGDWSGDDPDSTVLGVTMKAGPIT