Basic Information | |
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Taxon OID | 3300020376 Open in IMG/M |
Scaffold ID | Ga0211682_10001330 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13045 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_085 | |||||||
Coordinates | Lat. (o) | -62.2658 | Long. (o) | -49.1658 | Alt. (m) | Depth (m) | 90 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F054353 | Metagenome | 140 | N |
F068140 | Metagenome | 125 | N |
F096056 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211682_1000133016 | F054353 | GGA | MKAELDESSQVWTPMVIKITLETENEYLALRNIYSVQEVTSLNAEHRVRDRNVLTGLVNALVEAVGK |
Ga0211682_1000133017 | F096056 | AGGAG | MKWHTIYECEGYTFKWWGDCIIDVFKPVKDARKKPAPAYTEIEIYEEADNQVVKIRCLDWLVEEGVIKSSGMYL |
Ga0211682_1000133020 | F068140 | AGG | MNIKISNTNGAKNNKSYVRVYVNGDKVAEVSPSRRNPLGYLRTLKNSKHWGDMRVQLECCALAGMFTLKDVDNIMNEVKGVSSGS |
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