NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211656_10003498

Scaffold Ga0211656_10003498


Overview

Basic Information
Taxon OID3300020375 Open in IMG/M
Scaffold IDGa0211656_10003498 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7014
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020372Metagenome / Metatranscriptome224Y
F022429Metagenome / Metatranscriptome214Y
F058211Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0211656_1000349811F058211N/AMIPIENNSWDYVQRLIEREINSAFKLRIKEDNNKMKFKEDHPYMIRLDEVLKQYSVVKVADDNGAHHGADFEEMKQVILDALFTSYLGETIRK
Ga0211656_1000349812F020372N/AMNTEQKTNKATIRIYIDGKEMLYSHQNIVAAINNFLPYLTNDDLDEMKKTCHRLKDHRKQKEYLAKLETLKHSWPYPDTIKQ
Ga0211656_1000349817F022429AGGAMSFREIWNGPSFLNRKPSALRMAARDEAGKKNREKSGKLKAREHFAKDWDKDLWD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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