Scaffold Ga0211477_10033026

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10033026
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2161
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F033839	Metagenome	176	N
F077401	Metagenome	117	N
F105000	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_100330262	F013777	AGGAGG	MTKTFTMWGPTSIDHFKNLHDYYLKKKHAENIVHAYATPYNNNPADNPAAMWSFVMHQKRDLERMAFKSYIHPQGDFQNGYYDICDIEKETFDCDNMKLGEVYPVILYAHHETLLTVGCVVKTSDHPDVVTGEEQLALWIYYPSAENIESFDMISGHVYKD
Ga0211477_100330263	F105000	AGGAG	MHQEVKDREYYNGFIMNKSFRDWVKTCPKEYSWQMNQVTKDRGTYTFFLEEEED
Ga0211477_100330264	F077401	N/A	MKTFWAWKHSLNSSEKDKSGYTKILARDMNSAYRKAHKHYKHHMFNSNFNVSVMSGETDKHGYAKEAQYSTGKWTRKAWSTYKYFHSLKPEMQERVHNHYKEFGDDWKGQDKTDLRFLVALLRQEK
Ga0211477_100330265	F033839	AGGA	MNNLSPITRAFLTVGAGVIIGIIPVFMIINSLSTTAIKLCGRYGSDYTIVNLDTPLGTIKRCVAKN